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REPEATED MEASURES
•
reset
7
votes
9
replies
5.0k
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LIMMA: interpreting interaction terms in an unbalanced factorial design with repeated measures
LIMMA
FACTORIAL
REPEATED MEASURES
differential gene expression
8.8 years ago • updated 8.6 years ago
robert.maughan
• 0
8
votes
11
replies
2.4k
views
dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream
variancePartition
limma
differential expression
repeated measures
updated 4.6 years ago by
Gordon Smyth
50k • written 4.6 years ago by
hermidalc
▴ 20
6
votes
5
replies
2.1k
views
Incorporating subject ID as random effect for repeated measures RNA-Seq analysis
limma
rna-seq
mixed model
repeated measures
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
mikhael.manurung
▴ 270
2
votes
5
replies
1.4k
views
SVA for repeated measures design
SVA
deseq2
repeated measures
updated 4.6 years ago by
Robert Castelo
★ 3.3k • written 4.7 years ago by
sara.blocquiaux
• 0
1
vote
2
replies
861
views
Time series experiment analysis in DEseq2 without T=0 and three independent experiments with linked samples
deseq2
rnaseq
repeated measures
time series
design formula
updated 4.3 years ago by
Michael Love
42k • written 4.3 years ago by
Dorien
▴ 10
0
votes
1
reply
4.0k
views
DESeq2 - How to study time course experiment taking subject variability into account?
deseq2
repeated measures
time course
updated 6.4 years ago by
Michael Love
42k • written 6.4 years ago by
Marion
• 0
3
votes
2
replies
1.6k
views
Repeated Measures, Within-Subject, Between-Groups RNAseq Analysis
edgeR
rnaseq
repeated measures
updated 6.1 years ago by
Ryan C. Thompson
★ 7.9k • written 6.1 years ago by
wjh180
• 0
0
votes
4
replies
595
views
DESeq2 for repeated/clustered samples
deseq2
repeated measures
updated 4.4 years ago by
Michael Love
42k • written 4.4 years ago by
jperin
• 0
0
votes
0
replies
856
views
Model in metagenomeSeq
repeated measures
8.6 years ago
PJ
• 0
9 results • Page
1 of 1
Recent ...
Replies
Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Answer: GSVA function
by
Robert Castelo
★ 3.3k
Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …
Votes
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DESeq2: add annotations (from data frame) to DESeqDataSet
Add new columns to DESeqResults from text file by matching rownames.
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Robert Castelo
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kevin.rue
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Wei Shi
★ 3.6k
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Gordon Smyth
50k
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jovel_juan
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